rs52476125 SNP Detail

Summary

• ID
  rs52476125
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54688266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTCATA ATAAAGAGAT
  AAAGCTGATT CTTTTTTCTC CCTGAAGCAC AAACTAGCTC CTATAGCCAT GTGGTAAGGT
  CTTGCCTCTC CCTTTAAACA GATTTCCCAT CCTGAAAACT TTTTTCCCAG GTAATCAGAA
  TTTTCCTCAA ATTTTTTTCT TTAGTTTCTC TATTCAAAAT TGGAGTGTGT GTGTGTGTGT
  C
  TGTGTGTGTA TGTATGTCTG TGTGTGTGTG TGTGTGTCTG TATGTCTGTG TGTGTATGTA
  TGTCTGTGTG TGTGTGTGTG TGTGTCTGTG TGTCTGTGTG TCTGTGTGTG TGTATGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTAGACAGG ATCTGGAGAC ATAGCTCAGG ATGGCCTCTA
  ACTGAAGATC CTCCCTGAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss139563016	ENSMUSSNP2192024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52476125					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54688266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	1265 bp distal
Gm24424	predicted gene, 24424	745 bp upstream
Rr289213	regulatory region 289213	1866 bp distal
Rr289214	regulatory region 289214	1066 bp distal
Rr297196	regulatory region 297196	1265 bp distal
Rr389675	regulatory region 389675	1337 bp upstream
Rr404097	regulatory region 404097	1435 bp downstream