rs52476419 SNP Detail

Summary

• ID
  rs52476419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140689698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATG CACCATGTGC CCGTGGAGAA
  R
  AGAGAGCTGT ATTTCCTGAA CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147720423	ENSMUSSNP4298765	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52476419					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140689698 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15201	CpG island 15201			303 bp distal
Gm34431	predicted gene, 34431			945 bp upstream
Gm68270	predicted gene, 68270			1137 bp upstream
Rr367768	regulatory region 367768			209 bp downstream
Rr603592	regulatory region 603592			1174 bp distal
Rr603593	regulatory region 603593			1192 bp distal
Rr603594	regulatory region 603594			657 bp distal
Rr603595	regulatory region 603595			1079 bp distal
Rr603596	regulatory region 603596			344 bp proximal
Rr603597	regulatory region 603597			1017 bp proximal
Rr603598	regulatory region 603598			1341 bp proximal
Rr603599	regulatory region 603599			1624 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)			Intron
				Noncoding-Transcript-Variant
Tssr40003	transcription start site region 40003			1094 bp downstream
Tssr40004	transcription start site region 40004			1075 bp downstream
Tssr40005	transcription start site region 40005			985 bp downstream
Tssr40006	transcription start site region 40006			972 bp downstream
Tssr40007	transcription start site region 40007			807 bp upstream