rs52476423 SNP Detail

Summary

• ID
  rs52476423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:104220928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCTTCGCCCT GTTACGTTGT AGTTGGATTT GTCTGTTTGT
  CTGGGTTCAC CAGAGTGACT ATGATAGTGA AAAGAAAAGA AAGAAAAAGA AAAAAAAAAA
  R
  AAAAAGAAAA AGAAAAAGGA AAAAAAAAAG GACGCATGTA TCTTGAAATA TTTGTCAAAA
  GGTTCTAGCC CACCACGTGA TGGAGAGTCT GGATATCTCC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132753683	ENSMUSSNP2683794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52476423					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104220928 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	mRNA-UTR
Tssr3697	transcription start site region 3697	174 bp downstream
Tssr105389	transcription start site region 105389	1504 bp downstream
Tssr105390	transcription start site region 105390	318 bp downstream
Tssr105391	transcription start site region 105391	133 bp downstream
Tssr111229	transcription start site region 111229	1860 bp upstream