rs52476429 SNP Detail

Summary

• ID
  rs52476429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121947049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTCCAA AGGTCCTGAG TTCAAATCCC AGCAACCACA
  TGGTGGCTCA CAACCATCTG TAACAGGGTC TGATGCACTC TTCTAGTGTG TGTCTGAAGA
  Y
  AGCTACAGTG TATTCATAGT AATAAAATAA ATAAATCTTA AAAAAAGAAA AGACTATCAC
  TAATATGTAT GAGCCAGATC TGGTGACTCG ATAGCAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147409303	ENSMUSSNP4747748	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320487082	CHEV_2_121942304	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52476429					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121947049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	1389 bp proximal
Gm75635	predicted gene, 75635	1967 bp upstream
Rr55508	regulatory region 55508	751 bp proximal
Rr58060	regulatory region 58060	within coordinates
Rr373779	regulatory region 373779	828 bp upstream
Spg11	SPG11, spatacsin vesicle trafficking associated	within coordinates
Tssr19802	transcription start site region 19802	356 bp upstream
Tssr19803	transcription start site region 19803	1971 bp upstream
Tssr25950	transcription start site region 25950	1749 bp downstream
Tssr25951	transcription start site region 25951	1796 bp downstream