rs52476648 SNP Detail

Summary

• ID
  rs52476648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73415907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAATGAA CTTTTAAAAG
  GCTAAGAGGT TAGGGTTACA ACATAAAATA TTGAAAAACT AAAACAAACA ACAAAATAGT
  AAGTATATAA GGATGTGTTT CAATGTGACA TCTCATGCAT CATATATATC ACATGTAACA
  TCTATAATGT CTGAATTGCA TTCATCTCCA CTACTCACTC ATGTCCTCGT TTCTCTCCTA
  M
  CTGGTCCCCT TCTTTTCCTT TCCTTGTAGG ATATGGGGTG TGGTGCATGA GATGTGGGTC
  ATGGGTACGG GGTGTGGGGC ATCAGTGTGG GTTGTGGGTC ATGGGGCATG AAACAATATA
  TGTCAGTAGG GTCATTTACA GGGGCTCAGG GTGAGGAATA AAACATCTAC CTTCCCATCA
  ACCTGTAAGT CCTCAGAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60635575	NES16027810	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52476648					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60635575	NES16027810	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73415907 () rs orientation: forward

Symbol	Name	Function Class
Nwd1	NACHT and WD repeat domain containing 1	within coordinates
Tssr78011	transcription start site region 78011	882 bp downstream
Tssr78012	transcription start site region 78012	840 bp downstream
Tssr78013	transcription start site region 78013	813 bp downstream
Tssr78014	transcription start site region 78014	781 bp downstream