rs52478765 SNP Detail

Summary

• ID
  rs52478765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144980116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCATGCCT GATATCACTA AGTTATATCT CCACTCTCTC
  TCTGTCTCTG TCTCTCTATT TATTTATCTA TTCATTCATT CATTCATTCA TTCATTCATT
  Y
  ATTCATTCAT TCATTCATTC ATTTATTTTT CTGGTGCTTG GACTAGACCC AGGCTCTGTA
  AACTCAAGGA AAGGACCTGA GTCACACCTC CAGCTCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147850328	ENSMUSSNP5779393	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52478765					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144980116 () rs orientation: forward

Symbol	Name	Function Class
Rr398674	regulatory region 398674	1001 bp upstream
Rr604348	regulatory region 604348	782 bp proximal
Tssr40207	transcription start site region 40207	1184 bp upstream
Tssr44535	transcription start site region 44535	890 bp downstream