rs52479004 SNP Detail

Summary

• ID
  rs52479004
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143906450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCGGAG GAGGCAAACA
  CACCCATACT CCCGCACCAA ACTGCACCGG GATCTTGGGC AGCATTCACC AGCCACAGAT
  AAGGCCAACC ACAACAGCAG GGTTAAACTT TGAATAAAAT ATCCCACCCA CTGATTTAAC
  AGCTTCAGGA AGATCACTAT ACAGACAAAG GTTCAGAACA GACACTTAAA TAGAAGGAAA
  G
  TCTTCTTTTC TCTCTCTCTC TAGTGGTATT GGTGTGGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGGTTTTTT TTTTTTTTTA ATTACTGGAT GTTGAAACAG AACACCTCCT
  AGAAGCATTC AAGTGCGACA GTCTATCAAA CCATTTACTC AAATTAAATG TGTAATCCTT
  CAAATGCCTC CTTTCAAATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136029259	ENSMUSSNP6051942	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52479004					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143906450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13893	CpG island 13893	1676 bp distal
Cpgi13894	CpG island 13894	1122 bp proximal
Gm43445	predicted gene 43445	1427 bp upstream
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	16 bp downstream
Rr586595	regulatory region 586595	1438 bp distal
Rr586597	regulatory region 586597	937 bp distal
Rr586598	regulatory region 586598	76 bp distal
Rr586599	regulatory region 586599	1296 bp proximal
Rr586600	regulatory region 586600	1633 bp proximal
Tssr35961	transcription start site region 35961	1299 bp upstream
Tssr35962	transcription start site region 35962	238 bp downstream
Tssr35963	transcription start site region 35963	1226 bp downstream
Tssr35964	transcription start site region 35964	1273 bp downstream
Tssr35965	transcription start site region 35965	1611 bp downstream
Tssr35966	transcription start site region 35966	1661 bp downstream
Tssr35967	transcription start site region 35967	1890 bp downstream