rs52479319 SNP Detail

Summary

• ID
  rs52479319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31468719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTTGGTC AGCTCATATT
  TGATGGATTA AAAAGATCAG CACCCTAGCC AGGCAGTGGT GGCGCACGCC TTTAGTCCCA
  GCACTTGGGA GGCAGAGGCA GGTGGATTTC TGAGTTCGAG GCCAGCCTGG TCTACAAAGT
  GAGTTCCAGG ACAGCCAGGG CTACACAGAG AAACCCTGTC TTGAAAAACA AAAAAGCAAA
  R
  AAAAAAAAAA AAAAAAAAGA AAATCACCAC CCCAAAGGCC ACAAGGTAAG GGCTAGTTAG
  GGAAGGGGAA ACGAATCTTC CAAGACTGGG GTGAAGGAAG AAATATGATC AAAATGCATT
  GCACAAACTC TCAAAGGACT AATAAAAAAA TGAAGAGGGA GATTAATATG TAAAAGCGTA
  AGTTGAGCAA AATAGTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445900	ENSMUSSNP4480973	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52479319					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31468719 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	652 bp upstream
Tssr133931	transcription start site region 133931	621 bp upstream
Tssr133932	transcription start site region 133932	593 bp upstream