rs52479720 SNP Detail

Summary

• ID
  rs52479720
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8763593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTCAGG GCTGGGAGGA
  GTGAACTAGG TGCCCATTTA ACATTTCAAA GTGGACCTGG CCTCTAGATT TTTCCAGAAT
  CCCTCAGTCC CCTTTGCCTG GCCCTAGCCT ACCAGACCTG GGCTTCCCCT CCCCCAGGGG
  CTCTTCCCTA TATAATCAGA CATTTTGTTT TCTCTCCTTC CTCCGTCCTT CCCTCCCTCC
  S
  TCTATTTCTC CCTCAACACT CACTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT GCATCCTCTT TCTTAATTTC TCCCCCCCCC CACCCTCTTC CTTTCTGCAT
  GGTGACTTTC CCTGGTCTTG TTCCTTGGGA CTGGTGAACC GATTGAGAGC TGCCCCCCAA
  TAAACCTGCC TTTCGAACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146767829	ENSMUSSNP2380748	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss323245681	CHEV_10_8607647	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52479720					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8763593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	1083 bp distal
Gm26674	predicted gene, 26674	971 bp downstream
Rr427412	regulatory region 427412	1289 bp distal
Sash1	SAM and SH3 domain containing 1	1779 bp upstream
Tssr96655	transcription start site region 96655	1964 bp upstream
Tssr96656	transcription start site region 96656	1902 bp upstream
Tssr96657	transcription start site region 96657	1819 bp upstream
Tssr96658	transcription start site region 96658	1773 bp upstream
Tssr96659	transcription start site region 96659	1748 bp upstream
Tssr96660	transcription start site region 96660	1724 bp upstream
Tssr96661	transcription start site region 96661	1633 bp upstream
Tssr96662	transcription start site region 96662	1604 bp upstream
Tssr96663	transcription start site region 96663	1306 bp upstream
Tssr96664	transcription start site region 96664	1237 bp upstream