rs52480767 SNP Detail

Summary

• ID
  rs52480767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46504224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGACCGGCC CTTTCCACCC TCCTCTCTCC TTTCTTCTCC ATTCCTCCAC
  R
  TCATTTCTTT TTTTGGATTA TGTTTTATTT AGGGTCTTGT TTTGATTTTT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60312533	NES15816118	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs52480767					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312533	NES15816118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46504224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	118 bp distal
Rr363443	regulatory region 363443	1976 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	1154 bp downstream
Tssr156777	transcription start site region 156777	445 bp downstream
Tssr156778	transcription start site region 156778	23 bp downstream
Tssr156779	transcription start site region 156779	54 bp upstream
Tssr156780	transcription start site region 156780	368 bp upstream
Tssr156781	transcription start site region 156781	402 bp upstream
Tssr156782	transcription start site region 156782	468 bp upstream