rs52482118 SNP Detail

Summary

• ID
  rs52482118
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96678476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTTTGGTTT GTTTGTTTGT TTTTTTTTTT AAGACAAGCT
  CTCACTCTGT AACCTAGGCT ACATAGTCTA AACTGCGCTT TTTTTTTTTT TTTTTTTTTT
  T
  GGTTTGCTGT TGTGTTTGTT TGTTTGTTTG AGACAGGGTT TCTCTGTGTA GCCCTGGCTC
  TCCTGGAACT CACTCTGTAG AACAGGCTGG TCTTGAACTC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132687335	ENSMUSSNP1414199	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52482118					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96678476 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	1477 bp upstream
Cpgi3668	CpG island 3668	1190 bp proximal
Rr455508	regulatory region 455508	1057 bp proximal
Rr455509	regulatory region 455509	1610 bp proximal
Tssr104569	transcription start site region 104569	1468 bp upstream
Tssr104570	transcription start site region 104570	1499 bp upstream
Tssr104571	transcription start site region 104571	1563 bp upstream
Tssr104572	transcription start site region 104572	1585 bp upstream
Tssr110346	transcription start site region 110346	1338 bp downstream