rs52482261 SNP Detail

Summary

• ID
  rs52482261
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45024949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATCTTCA ACTGAGTCAC
  TACCTGCACA AAATCAAGGC CAGCCTGTCT AAATGGGTTC CAGGACATCG AGGGCCACAG
  AGAGAAACTG TCACCAAAAC CCAAAACAAA CCAAAACAAT CAAATAAACA AAAACAGCTC
  CCCCATCCCC CCAAAAGAAA GAAATCCCAA TGAATCTGTT TACTAAGCAA GACTTGGCCA
  K
  TTGGTTTATT AGTTTCCAGT CTGTATTCCA CAGACCTTTT TAAAATTATC TCCTCAGAAA
  AGACTATATA CTTGGCATAC ATTTGACAGC TTAAGGATAG CTTCATCCTC ATTCATCATT
  TCTGAGGGTT AAGTCCATAG CTACTTGGCC CCATATACTT AGCAGGAACC TGTGGCATTG
  CTTCTCATCA CAGGATGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61003650	NES16116928	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52482261					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003650	NES16116928	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45024949 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	928 bp downstream
Tssr66520	transcription start site region 66520	1645 bp upstream