rs52482566 SNP Detail

Summary

• ID
  rs52482566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127683671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCATGG CGTCTTCAGT
  TGGCCCTTTA ATCTTGCTTT ATCATTTCTC CTAAGTAGGG AATTGAAAAA ATGTCATCTG
  GGATTATTTT TGCTCCTGTC AAAAATTATT GACAAACTGG GGAGAATCAA CTTAAGATCT
  TCATTTAAAA GGAAAACAAA ACAAAACAAA CCTTGTCTCA AACAACAACA ACAACAACCC
  M
  ACAAGTTGGT AAGGTTTTTT CCCTTAGAGA ATTATAAAAC AATTAATCTT AGAGAATATT
  TACTAAAATG AAATTCTATG ATGCTACTAG TTGAGGCAAA TAAAATTGAA CCAGAGGGAA
  AGGTGAAGAA GAGAGCATGA ATTAGAGATA GGGAGCTAAT ACTTACTGAA GGCCTACTGT
  GTGCTGGGCA TTCTGTGTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135874301	ENSMUSSNP872035	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52482566					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127683671 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	98 bp distal
Rr584893	regulatory region 584893	108 bp proximal
Rr584894	regulatory region 584894	774 bp proximal