rs52483004 SNP Detail

Summary

• ID
  rs52483004
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33357909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA CAGACACACA CACACACACA
  S
  AGAGAGACAG ACAGACAAAT GACCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146405542	ENSMUSSNP2928930	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss320222526	CHEV_2_33323417	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52483004					SNP	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33357909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11539	CpG island 11539	within coordinates
Gm75558	predicted gene, 75558	164 bp upstream
Rr373021	regulatory region 373021	172 bp upstream
Tssr17390	transcription start site region 17390	190 bp upstream
Tssr23602	transcription start site region 23602	596 bp downstream
Zbtb43	zinc finger and BTB domain containing 43	within coordinates