rs52483977 SNP Detail

Summary

• ID
  rs52483977
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129578755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATTAAC CATGAACTAT
  GTGACTTTTG GCAATCATTT AACTTGTCTG CTCTTCCCTT TCCTCATAAG TTAGATGAAG
  GTAAGAGGAA CCACAGACAA CCCAGGCCTA AAGAGATCTG AATACATAAC GAAGAAAGAG
  TCCTCTCAAC ATCCACTTTA AAAAAAAAAA AAAATATATA TATATATATA CACACACACA
  C
  ACACATATAT ATACATATAC ATATTTACTT ATTTATTTAT TTTTGTGAGC TGGTGAGATG
  GCTCAGTGCC TAAGAGCACA GGCTACTCTT CCAGAGGTCC TGAGTTCAAT TCCCAGCAAC
  CACATGGTGG CTCACAACCA TCTATAGGGG GATCTGATGC CCTTTTCAGG CAGGCAGATA
  TATATGCATC CGAGTACTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147446225	ENSMUSSNP2388948	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52483977					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129578755 () rs orientation: forward

Symbol	Name	Function Class
Gm68938	predicted gene, 68938	27 bp downstream
Mir7016	microRNA 7016	391 bp upstream
Rr600314	regulatory region 600314	749 bp distal
Tmem39b	transmembrane protein 39b	within coordinates
Tssr43555	transcription start site region 43555	217 bp upstream