rs52483981 SNP Detail

Summary

• ID
  rs52483981
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:74702436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACACATTCT AGACAGTCAA TCACTACCAC CAAATTAAAA
  GTCTCAGGCC TGGAAGGTTT TGTGGGACCA TGGGATTTTA AAACTTATTT TAAGTAAAAC
  W
  TGAGCAAAAG TATTTAGTAA GTTCGTTTGC TCTTTTTCTC TTCTTACTTT CTTCTTTTGT
  TTTGTTTTGT TTTGTTTTTC TAGACAGAGT TTCTCTGTGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60752366	NES16389459	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52483981					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60752366	NES16389459	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74702436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	1071 bp distal
Gm70804	predicted gene, 70804	1864 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	1883 bp distal
Rr413231	regulatory region 413231	1522 bp distal
Rr413232	regulatory region 413232	382 bp distal
Rr413233	regulatory region 413233	1458 bp distal
Rr413234	regulatory region 413234	1949 bp proximal
Tssr7442	transcription start site region 7442	1709 bp downstream
Tssr7443	transcription start site region 7443	1621 bp downstream
Tssr7444	transcription start site region 7444	1564 bp downstream
Tssr7445	transcription start site region 7445	1488 bp downstream
Tssr7446	transcription start site region 7446	1445 bp downstream
Tssr7447	transcription start site region 7447	1161 bp downstream
Ttll4	tubulin tyrosine ligase-like family, member 4	Intron