rs52484812 SNP Detail

Summary

• ID
  rs52484812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTACA AACTAGTAAA
  AAAAAGTTCC TTAAATGTTA AACCTTGAAT GTATATATTA AAATAATAAT GTCTTTCACT
  AAGTGTGGGG ACTCTATAAC CTCAGCACTC AGAAGACTGA GGCAGGATTA TAACTTCAAA
  GTCAGCAGGG CCTATAAAGC AAGACTTCTC TCTCCTGCCC TCCCCCAGGG AAAAACAAAA
  R
  AAGAAATCCC TCTTTCTGTG TGCACATATA TGTATGTATT TATGTATGTG TGTATATATG
  TATGTATGTA ATGTATGTAT ATACTAATAG ATTTCTCTTA GTTCCCTCCT TCCCGATTTT
  GCTGCTGTTG TTTTCATTCT GTAGCCCAGG CTGTCCTGGA GCTCACTCTA TAGATCAGGC
  TGCCCTTGAA CTCAGAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148092196	ENSMUSSNP6524548	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320584255	CHEV_2_156941044	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52484812					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957228 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	348 bp distal
Rr568436	regulatory region 568436	1646 bp proximal
Rr568437	regulatory region 568437	1819 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27142	transcription start site region 27142	1903 bp upstream
Tssr27143	transcription start site region 27143	982 bp upstream