rs52485110 SNP Detail

Summary

• ID
  rs52485110
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150320305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT TTGTTTGTTT GGTTTTTTTT
  T
  GACAGGGTTT CTCCTTGTAA CTTAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148050629	ENSMUSSNP5857600	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321428725	CHEV_4_149609957	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52485110					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150320305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	613 bp proximal
Eno1	enolase 1, alpha non-neuron	873 bp upstream
Rr377416	regulatory region 377416	222 bp upstream
Rr605238	regulatory region 605238	732 bp distal
Rr605239	regulatory region 605239	614 bp proximal
Tssr40390	transcription start site region 40390	837 bp upstream
Tssr40391	transcription start site region 40391	922 bp upstream
Tssr40392	transcription start site region 40392	941 bp upstream
Tssr40393	transcription start site region 40393	954 bp upstream
Tssr40394	transcription start site region 40394	968 bp upstream
Tssr40395	transcription start site region 40395	1354 bp upstream
Tssr40396	transcription start site region 40396	1363 bp upstream
Tssr40397	transcription start site region 40397	1455 bp upstream
Tssr40398	transcription start site region 40398	1846 bp upstream
Tssr40399	transcription start site region 40399	1875 bp upstream