rs52486153 SNP Detail

Summary

• ID
  rs52486153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAAACA AAAATTTCAA
  AATAAAAAAT TTGGAATATC TGGGTACAGT GGCTCACACC TATGATCCCA GCATTCTGAG
  GCAGGAGGAT TACCAGGACT TTGAGGCTAG CCTGGGCTAC ATAGTGATAT CCTGTTTCAA
  AAACCAAACC CCAAAAGGAT CCAGGTGTGC TAGCATACAA CGTCAATCCA GCATTCAGCA
  R
  GCAAAGGCAG AAGGCAGAGG GCAGAGGGCA GAGGCAGAGG CTGACAGATC TCTATGAGTT
  TGTGGCTAAC CTGAGCTACA CAGTTCTAGG CTAAACTGGC CTACAAAGTG AGATCCCGTT
  TCAGAAGCAG AATATAGGGA CATCCATGAG TGAAGCTGGT CTCCATGAGT CTGGTACCCA
  CATACTGAGT ACCACACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148399951	ENSMUSSNP1782987	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52486153					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	646 bp proximal
Gm71929	predicted gene, 71929	1484 bp downstream
Pnma8b	PNMA family member 8B	874 bp upstream
Rr368243	regulatory region 368243	648 bp upstream
Rr642821	regulatory region 642821	439 bp distal
Rr642822	regulatory region 642822	384 bp proximal
Rr642823	regulatory region 642823	797 bp proximal
Rr642824	regulatory region 642824	1835 bp proximal
Tssr64660	transcription start site region 64660	837 bp upstream
Tssr64661	transcription start site region 64661	1886 bp upstream
Tssr70792	transcription start site region 70792	1841 bp downstream