rs52487730 SNP Detail

Summary

• ID
  rs52487730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATCTCTA TGCTCTTTGT
  TAATGAAAGT GCTGGGATTC AAACGTGGTT CTTTATAAAT CCTGTGTCTG TGTTTTTAGG
  GAAAGGAAAT AGGAAATAAA GGAGGGAGGG AGGGAAGGAA GAAGAGAGGC AGGCAGGCAC
  AAAGGAAGGA AGGATGGAAG GAAGGAAGGA AGGAAGGACG GCAGGCAGAG AGGTTGCTGG
  Y
  GTGAGGTGAC AGCTTCCTAT GGCCCCGATT GAGTACCTGT CATAGCCCAT CTGTCTGCAG
  GCTGTCTTGG CCAGTGCTTC TGTGAAGTTG TCGAAACAGA CTGAGGCCCA GGTCCCTGTG
  GCTGCATCCA GCACCTGCAG GGTGGATCTG TCCTTGGAGA GCCGGACTAG GAGGGAAGGC
  GCCTGGGTCA GCTGGAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388756	NES16766285	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52487730					SNP	T	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388756	NES16766285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1067 bp distal
Rr677859	regulatory region 677859			278 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant