rs52488049 SNP Detail

Summary

• ID
  rs52488049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCACATT TTTTTGGGGG
  GCATGTTAGC TAAACTAGTC TGTACAACCG AGGTATAAAC ACTTTCACTA GGTACACATT
  CAAGGAATAC CTAACCAAAA AAGAAAGTCA CCCCCACAAA TTAGATGCCA GCTTTTTTTT
  GTTTTGTTTT GTTTTGTTTT GTTTTGTTTT GTTTTTTTCG AGACAGGGTT TCTCTGTATA
  R
  CCCTGGCTGT CTTGGAACTC ACTCTGTAGG CCAGGCTGGC CTTGAACTCA GAAATCCGCC
  TGCCTCTGCC TCCCGAGTGC TGGGATTAAA GGCGTGCGCC ACCACCGCCC GGTAGATGCC
  AGCTTTTTAA TAATAGAAAT GCTATGATAT TTCTCTTGAG TGTCCAGGCT CCATGTCCCC
  AGGTTTGTAA CTTTAGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137298208	ENSMUSSNP3702616	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52488049					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424588 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	955 bp upstream
Cpgi4477	CpG island 4477	380 bp distal
Gm49586	predicted gene, 49586	241 bp downstream
Rr463712	regulatory region 463712	1148 bp distal
Rr463713	regulatory region 463713	904 bp distal
Rr463714	regulatory region 463714	1023 bp distal
Rr463715	regulatory region 463715	within coordinates
Rr463716	regulatory region 463716	843 bp distal
Rr463717	regulatory region 463717	355 bp distal
Tssr112932	transcription start site region 112932	808 bp downstream
Tssr112933	transcription start site region 112933	330 bp downstream
Tssr115856	transcription start site region 115856	1095 bp upstream
Tssr115857	transcription start site region 115857	1069 bp upstream
Tssr115858	transcription start site region 115858	1041 bp upstream
Tssr115859	transcription start site region 115859	995 bp upstream
Tssr115860	transcription start site region 115860	970 bp upstream