rs52488389 SNP Detail

Summary

• ID
  rs52488389
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55149171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC TCATGCTCCA TGCATGCATA
  A
  TGCAAACACA AATACACATA GGCAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133207727	ENSMUSSNP3933309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321805437	CHEV_6_55122180	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52488389					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55149171 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136025	regulatory region 136025	171 bp distal
Rr144444	regulatory region 144444	1564 bp distal
Rr144445	regulatory region 144445	206 bp distal
Rr146343	regulatory region 146343	1229 bp proximal
Tssr61113	transcription start site region 61113	1288 bp downstream
Tssr61114	transcription start site region 61114	1741 bp downstream