rs52488655 SNP Detail

Summary

• ID
  rs52488655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136806445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAACGA AATCTTCATA AAGTGTGAAC TTGGTCTGTC
  TCGAAAAAAA ACCAAAAAGC AAAACAAAAC AACAAAAAAC CAAAAACAAA AAAACACAAA
  Y
  CAAAAAACCA AAAACACCCT CACACTTGGT TATTTTTCAA CTTAGTTTCA GCATCCTTAA
  CAGAAAAGGT CCTAAGGGAA TTTTTGACAT CAAGTACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133848604	ENSMUSSNP4245589	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321998865	CHEV_6_136777968	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52488655					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136806445 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	1024 bp distal
Rr380176	regulatory region 380176	80 bp downstream
Rr640072	regulatory region 640072	1225 bp distal
Rr640073	regulatory region 640073	594 bp distal
Rr640074	regulatory region 640074	305 bp distal
Smco3	single-pass membrane protein with coiled-coil domains 3	484 bp downstream
Tssr2044	transcription start site region 2044	967 bp downstream
Tssr59337	transcription start site region 59337	1687 bp downstream
Tssr59338	transcription start site region 59338	1649 bp downstream
Tssr59339	transcription start site region 59339	1636 bp downstream
Tssr59340	transcription start site region 59340	1608 bp downstream
Tssr59341	transcription start site region 59341	991 bp downstream
Tssr59342	transcription start site region 59342	622 bp downstream
Tssr63836	transcription start site region 63836	1703 bp upstream
Tssr63837	transcription start site region 63837	1686 bp upstream
Tssr63838	transcription start site region 63838	1678 bp upstream
Tssr63839	transcription start site region 63839	1622 bp upstream
Tssr63840	transcription start site region 63840	1385 bp upstream
Tssr63841	transcription start site region 63841	1268 bp upstream
Tssr63842	transcription start site region 63842	1250 bp upstream
Wbp11	WW domain binding protein 11	1231 bp upstream