rs52488757 SNP Detail

Summary

• ID
  rs52488757
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113363284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATGTCTG CCTTTAGAGA GCCTTTACAA CACTAGAGAT
  GGGTGGATGG ATGGATAGAT GGTTAGATTG ATGATGGATG GATAGATGAT TGGATGGATG
  S
  ATGATGGATG GATGGATGGA TGGATAGATG GTTAGATTGA TGATGGATGG ATAGATGATT
  GGATGGATGG ATGATGGATG GATGGATAGA TGGTTAGAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145682716	ENSMUSSNP1065629	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52488757					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113363284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	1585 bp proximal
Rr653859	regulatory region 653859	1523 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1951 bp upstream
Tssr68625	transcription start site region 68625	1728 bp upstream
Tssr68626	transcription start site region 68626	1790 bp upstream
Tssr68627	transcription start site region 68627	1859 bp upstream
Tssr68628	transcription start site region 68628	1978 bp upstream
Tssr68629	transcription start site region 68629	1997 bp upstream