rs52490679 SNP Detail

Summary

• ID
  rs52490679
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45008198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTCAAGAA ACAAACTGGG TTTTCTTCTC ATGATTATTA
  GAAAGTGGAA AAAAAAACCC AACAAAACAA AACAAAACCA AAACCTCCCA AAGCTGTCTG
  C
  CTGCCCCCCC CCCCCCCCAA CATCGACTGA TCAATTCAGG GAGAAGCAGC CTGTTGTGCA
  TTCTGTTTAA TTGCTGAGCA GCAGATCCAC ACCTTGGGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146484903	ENSMUSSNP1432228	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52490679					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45008198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	629 bp distal
Gm28643	predicted gene 28643	19 bp upstream
Rr373117	regulatory region 373117	536 bp downstream
Rr556444	regulatory region 556444	802 bp distal
Rr556445	regulatory region 556445	325 bp distal
Tssr17636	transcription start site region 17636	902 bp downstream
Tssr23988	transcription start site region 23988	1188 bp upstream
Tssr23989	transcription start site region 23989	841 bp upstream
Tssr23990	transcription start site region 23990	811 bp upstream
Tssr23991	transcription start site region 23991	775 bp upstream
Tssr23992	transcription start site region 23992	670 bp upstream
Tssr23993	transcription start site region 23993	647 bp upstream
Zeb2	zinc finger E-box binding homeobox 2	791 bp upstream