rs52490776 SNP Detail

Summary

• ID
  rs52490776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171124556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGCCACACAG CTCTTTATAA AGATATTAGA TGTAGCTAAC
  ACATCTTTGT AATGCTTCAC TAAAGATCTC CTAAGGTAAA TAAAATTTAT ATCTGTGTTT
  R
  TTTATTTTAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGCG
  CGTGCAGTCA CAGTGATGTG GTCAGGGAAC AGTGGTTTGA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146159510	ENSMUSSNP3279463	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52490776					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171124556 () rs orientation: forward

Symbol	Name	Function Class
Rr28967	regulatory region 28967	1356 bp distal
Rr31956	regulatory region 31956	156 bp distal
Rr372447	regulatory region 372447	327 bp downstream
Tssr15033	transcription start site region 15033	1972 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	1981 bp upstream