rs52491957 SNP Detail

Summary

• ID
  rs52491957
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAGCCCA TGTGTGATTG TGTGTGAGTA ACTATACACA
  CACACACATA CACACACTTA GATGTTGTGT TTAGTGTGTG TGTGTGTGTG TGTGTGTGAG
  T
  GAGAGAGAGA GAGAGAGAGA GAAGGAGGAG GAGGAGGAGG AAGTTATGTG TTGTGAGAAA
  GTGTGTGTAA GAAACATTGT AACAGACTGT AACCAAGTG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135874478	ENSMUSSNP5690325	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52491957					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	377 bp distal
Fam241a	family with sequence similarity 241, member A	577 bp upstream
Rr398009	regulatory region 398009	327 bp downstream
Rr584896	regulatory region 584896	881 bp distal
Rr584897	regulatory region 584897	86 bp distal
Tssr35607	transcription start site region 35607	1387 bp upstream
Tssr35608	transcription start site region 35608	667 bp upstream
Tssr35609	transcription start site region 35609	630 bp upstream
Tssr35610	transcription start site region 35610	563 bp upstream