rs52492624 SNP Detail

Summary

• ID
  rs52492624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122581486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACTTAAAAGA GGAACAGGAA GCAGAAACTG AAGGGGAGAG
  ACCATGGAGA AATGCTGAAT ACTGGCTTTT CCCTCATGGT TTGCTCAACC TGCTTTTCTT
  Y
  CTTCTTTTCT TCCTTATTTT ATTTATTTAT TTATTTTATT TTTAGGTGTG TGTGTGTGTG
  TGTGTGTGAG ATTTACTGGC ACTAGAGTAC ATGGGAGCTG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133609464	ENSMUSSNP5937390	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52492624					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122581486 () rs orientation: forward

Symbol	Name	Function Class
Gdf3	growth differentiation factor 3	876 bp downstream
Rr399900	regulatory region 399900	116 bp downstream
Rr638223	regulatory region 638223	1593 bp distal
Rr638224	regulatory region 638224	724 bp proximal
Rr638225	regulatory region 638225	1037 bp proximal
Rr638226	regulatory region 638226	1145 bp proximal
Tssr58686	transcription start site region 58686	1822 bp downstream
Tssr62926	transcription start site region 62926	1415 bp upstream
Tssr62927	transcription start site region 62927	114 bp upstream