rs52493040 SNP Detail

Summary

• ID
  rs52493040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156713654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAGTGCT AGGAATGGAA CTCAAAGTTG AGTGTGTCTA
  GAGCACTAGA CAAGTGTTCT GCCATTGCGT TGAGACCCCT GCCCGGTGCT TTAAATGGTT
  K
  TTGTTGTTGT TGTTGCTTTG GTTTGGTTTT TTTTTTGAGA CAGGGTTTCT CTGTGTAGCC
  CTGGCTGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148084841	ENSMUSSNP3697697	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320582496	CHEV_2_156697470	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52493040					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156713654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			875 bp distal
Rr568378	regulatory region 568378			1836 bp proximal
Tssr21217	transcription start site region 21217			764 bp upstream