rs52493204 SNP Detail

Summary

• ID
  rs52493204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152915112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGACTAAGT CTTATAAGCA ACTTTTTGTG
  CTTTGTTGTG AGACAGGGTC TCTCTGCACA GCTctgactt gcccactgaa tgctgggatt
  atgggtgtat cccaccaact tggctCTAAG TGTTTAATAC CCTTAAACag agagaaagag
  Y
  cagagagaca gagaaagaaa gagaaagaga gagagaaagc catccccagt taaaggttct
  cctttatagg agttgcagtg gtcatggtgt ctcttcacag caagaaatcc ctaagtaaga
  caTTCTCTCA CGcagagaga gagacagaga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145736566	ENSMUSSNP6751399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320070028	CHEV_1_154886491	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52493204					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152915112 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			within coordinates
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			1156 bp distal
Rr420581	regulatory region 420581			596 bp proximal
Rr420582	regulatory region 420582			991 bp proximal
Rr420583	regulatory region 420583			1170 bp proximal