rs52494287 SNP Detail

Summary

• ID
  rs52494287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82600787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGGCT ATATAATTAA
  GTTGTGTTAC CTAGGTAGCT CATGTGGGCT GACAGGCTGC GTGACCAGGT GGGAAGAGCT
  CAAAGGGCTC CCTGGCTCTT AACACCACTC TACCCAAACC GCTTCCTGCT TGTCTGCTTT
  TTTTGTTTGT TTTGCTTTGT TTTTTGTTTG TTTGTTTTTG TTTTTAAGCT CTTAGCAGCC
  R
  GCTCTGAGGG AAGGGCTCTG ATTCGCTAGT TCAGTGTGGC AGTTAGCACC TGGGCTGGGG
  AGAATCAGTG GCTCTCTGTG TCTTTGGGAC CCACATCTTA TTTCTAGGTG GATAAAAGGA
  GCCTTTGCCT CTTGTAGTGT CCCCATGAGG TTGTAGGGTC TCATGGGGAC AAAGGTATCC
  AGCAGAGAGT GCTCGCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436692	MGP_WTSI_18_82752054	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52494287					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436692	MGP_WTSI_18_82752054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82600787 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	1960 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	1003 bp proximal
Tssr152152	transcription start site region 152152	1446 bp upstream
Tssr152153	transcription start site region 152153	1474 bp upstream
Tssr152154	transcription start site region 152154	1588 bp upstream
Tssr152155	transcription start site region 152155	1626 bp upstream
Tssr152156	transcription start site region 152156	1699 bp upstream
Tssr152157	transcription start site region 152157	1750 bp upstream
Tssr152158	transcription start site region 152158	1807 bp upstream
Tssr152159	transcription start site region 152159	1837 bp upstream
Tssr152160	transcription start site region 152160	1887 bp upstream
Tssr152161	transcription start site region 152161	1904 bp upstream
Tssr152162	transcription start site region 152162	1920 bp upstream
Tssr152163	transcription start site region 152163	1945 bp upstream
Tssr152164	transcription start site region 152164	1985 bp upstream
Tssr154083	transcription start site region 154083	1555 bp downstream
Tssr154084	transcription start site region 154084	1579 bp downstream
Tssr154085	transcription start site region 154085	1851 bp downstream