rs52494639 SNP Detail

Summary

• ID
  rs52494639
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47412850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TATGCAAATG ATGCTGAAGA CCTGGGAGGC ACAGAGCTGC
  CTGTGCTTCT AGTTCTCTCT GATTCCAGGG CACGCTCAGT GGGGTGTGTG TGTGTGTGTG
  C
  GTGTGTGTTT ATGTGTGAGT GTGTGTGCGA GTGTGTGAGT GTGTGTGTGT GAGTGTGAGT
  GTGTGAGTGT GTGTGTGAGT GTGTATGTGT GTGTGTGTGT G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss139400079	ENSMUSSNP5587065	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52494639					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47412850 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Tssr128307	transcription start site region 128307	255 bp downstream
Tssr128308	transcription start site region 128308	1911 bp downstream