rs52495162 SNP Detail

Summary

• ID
  rs52495162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160903852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTAATGAA TAAATGAGGG CTAGTTCACT
  TAATTCATTT TAATACTGCT ATGGAGCCAA TACAAATAAA GCTTGCttgt ttttttttag
  tttttgtttt tgtttttTCT GTTTGTTTAC TTTTACtttc gtttctttga gacagagtgt
  Y
  cctatataag cctgttagct tagaactcac tgtgtagact gggccaggtg gaccttgcac
  ttgtgggcgg tctctgtctg tctcaggaga gctggggtta cagtcgtgta ccatcatgcc
  tggctCACAT TTTTTTTTTT AAGTGAACAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145905507	ENSMUSSNP689162	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320080235	CHEV_1_163006413	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52495162					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160903852 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			5 bp upstream
Rr421754	regulatory region 421754			within coordinates