rs52495550 SNP Detail

Summary

• ID
  rs52495550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12420559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTATACTT GGATCTGAGT
  GGACCCACGG ATCTCAGACT TGACTTGGCC AAGATACTCT GGTAGCAGAG GAGTCTTCTG
  AGAAGGAAAG CATCCATTTC TCATGTCTGC CTTCACCCAG GGCTCCCAAC CCTTGCTTCG
  TGGGTTGATA CATAGGCACT GAGGTTGGAG GTCAAGTAAA TTAAATCACT GGATCACTGG
  Y
  CTGGAAGCTC AACTCAGGCA CCTCTGGTGT GTGTGTGTGT CTGTGTGTGT GTGTGTCTGT
  GTGTCTCTGT GTGTGTGTGT CTCTGTGTGT GTGTGTGTCT CTGTGTGTGT GTGTCTCTCT
  GTGTGTGTGT CTCTGTGTGT GTGTGTCTGT GTGTGTGTGT GTCTGTGTGT CTGTGTGTGT
  GTGTCTCTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61349680	NES16962125	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52495550					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61349680	NES16962125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12420559 () rs orientation: forward

Symbol	Name	Function Class
4921511I17Rik	RIKEN cDNA 4921511I17 gene	within coordinates
Cyria	CYFIP related Rac1 interactor A	within coordinates
Rr259609	regulatory region 259609	442 bp proximal
Rr259610	regulatory region 259610	842 bp proximal
Rr386868	regulatory region 386868	1290 bp upstream