rs52496956 SNP Detail

Summary

• ID
  rs52496956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85532272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAAGGGT TCCAATGTTT GGTTCTTAGC ATCCACTTTC
  GGTGGCTCAT AACAACCTGT AATTCCAGCT CCAGGGGATC TGATGCACCT CTTCTGGCCT
  R
  CACACACACA CACACACACA CACACACACA CACACACAGA CACACACACA GACACACACA
  CACAGACACA CACAGACACA CACACACACA CTTAAAAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325042437	CHEV_15_85478501	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52496956					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85532272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	1744 bp distal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	within coordinates
Rr507252	regulatory region 507252	1621 bp distal
Rr507253	regulatory region 507253	1120 bp distal
Tssr132526	transcription start site region 132526	1944 bp downstream