rs52498636 SNP Detail

Summary

• ID
  rs52498636
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57719750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA GGAAAAGGAA AGAAATGAAG
  A
  AGAAGGAAGG AAGAGAAAGA GGAGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132181240	ENSMUSSNP3556792	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323685753	CHEV_11_57642426	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52498636					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57719750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	564 bp distal
Cpgi2911	CpG island 2911	149 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1167 bp distal
Rr447812	regulatory region 447812	407 bp distal
Rr447813	regulatory region 447813	22 bp proximal
Rr447814	regulatory region 447814	561 bp proximal
Tssr3506	transcription start site region 3506	346 bp downstream
Tssr108123	transcription start site region 108123	32 bp downstream
Tssr108124	transcription start site region 108124	93 bp downstream
Tssr108125	transcription start site region 108125	125 bp downstream
Tssr108126	transcription start site region 108126	311 bp downstream
Tssr108127	transcription start site region 108127	384 bp downstream
Tssr108128	transcription start site region 108128	391 bp downstream
Tssr108129	transcription start site region 108129	522 bp downstream