rs52500332 SNP Detail

Summary

• ID
  rs52500332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82906660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GGTGGGTGGG GGATGTCAAG
  R
  CCACACTTAA TAATTCTTCT AATCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136700061	ENSMUSSNP5847946	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323044120	CHEV_9_82918214	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52500332					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82906660 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	591 bp upstream
Rr401561	regulatory region 401561	684 bp downstream
Rr683838	regulatory region 683838	627 bp distal
Rr683839	regulatory region 683839	482 bp distal
Tssr90739	transcription start site region 90739	600 bp upstream