rs52502346 SNP Detail

Summary

• ID
  rs52502346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19229442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTCACT TTGTGCTGAA
  GACTTTAAAT GTCTTTACCT GGTTACAAGT CTTGTTCAAA ATGTCACAAA TACTGAGTTT
  ATATGTGAAA TTTCTCTGTT ATTTCGAAAA AACAACAACA ACAACAACAA AAACCAGTTA
  AACCAGTTTT CTTGATTTTA TGCACCACCT CTAATTTTGA ATCTTTCCAC CTACTTTTCC
  R
  TGAATATTCC TGCACCTTGA GGAAACAGGG GGTATGTGTG TGTGTGTGCG CGTGCATGCG
  TGCGTGCGTG AGTGCGTGCA TGCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTAAGTTCT ATATGTTTTG ACCAATTGAA ATTCTCTCTG TTAATTACCA CCTACTGGAA
  AAAGACGCTT CTCGAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63674917	NES17060069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52502346					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63674917	NES17060069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19229442 () rs orientation: forward

Symbol	Name	Function Class
Gm25762	predicted gene, 25762	466 bp upstream
Or2m13	olfactory receptor family 2 subfamily M member 13	within coordinates