rs52502672 SNP Detail

Summary

• ID
  rs52502672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71734948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATTAAGT GGCTCTCAAC ACCTGTTACT CCAATTCTAG
  GGCATCTGAT GCCCTTTTCT GCTCTCTGAA AGCACCTAAA CACACATTAC TACACACTCA
  Y
  GCACACACAC ACACACACAC ACACACTCAC ACGCAGAGAG AGAGAGCAAG GCACAGAGAC
  ACAGACAGAC AGACAGGAAT TAAAAAAATA AAAAGAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133277117	ENSMUSSNP4928544	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321818278	CHEV_6_71707958	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52502672					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71734948 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	481 bp downstream
Rr368099	regulatory region 368099	119 bp downstream
Rr631995	regulatory region 631995	14 bp distal
Rr631996	regulatory region 631996	828 bp distal
Rr631997	regulatory region 631997	868 bp proximal