rs52502863 SNP Detail

Summary

• ID
  rs52502863
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8822077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGTGCTG TGAATTGGGG
  ACCTACTACT CGCTTATCCC CAAAGGAATT GAGGCTTTAA ATTTAAATTA TTTTAACTTG
  ATAAAACCCT TTTATTTCTC AAAGTTAAAA GGCTCAAGAC ATTTCATAAT TAAGGGTGCC
  CTGTAGTGCT CATTGTTTGA TACTGCCATG TAATCTGTTA ACTTAGGAAA ACAATTTGTT
  W
  TTGGGCTGTT TTCTGTTTGA TTGTTTGCTT TTAAGTTTTT GGGTTTTTTT TTTTTTTTTA
  AAATGGGTAA TGGATAAAGC CCGAGGCTAG GCAGATAGCA ACTTTCAGTA CTATTACATT
  ACTGATTCTC ATTTATTTTC AAATGTTAGT AGCTATGCTG GATGCTTGGC ATTATCCATT
  ATCATTAAGT AGGGGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145983615	ENSMUSSNP3025415	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52502863					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8822077 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	58 bp upstream
Tssr36434	transcription start site region 36434	297 bp downstream
Tssr36435	transcription start site region 36435	275 bp downstream
Tssr36436	transcription start site region 36436	705 bp upstream
Tssr36437	transcription start site region 36437	732 bp upstream
Tssr40890	transcription start site region 40890	550 bp downstream
Tssr40891	transcription start site region 40891	1164 bp downstream