rs52503280 SNP Detail

Summary

• ID
  rs52503280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122525270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAATAAAAA TACAATTAAA GCCTCAATTA CAATGCTAAC
  TGTAAAATTA GATATTCTGA GGCCCCAAAA GACTTTTTCA AGTTAGGACA TTATGTGTGT
  R
  CTGTGTGCAT GTCCGTGTGT GTGTGTGTGT GTATGTGTAT GTGTGTGTGT TAAGAGTGCA
  ATTTGGAAGA TGAAAGTGTA AAATGCTTTA AAATAATTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748534	ENSMUSSNP4732517	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320914180	CHEV_3_122434539	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52503280					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122525270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	686 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584395	regulatory region 584395	297 bp distal
Rr584396	regulatory region 584396	1138 bp distal
Tssr31514	transcription start site region 31514	1886 bp downstream
Tssr31515	transcription start site region 31515	1752 bp downstream
Tssr31516	transcription start site region 31516	1727 bp downstream
Tssr31517	transcription start site region 31517	1692 bp downstream
Tssr31518	transcription start site region 31518	1564 bp downstream
Tssr31519	transcription start site region 31519	1502 bp downstream
Tssr31520	transcription start site region 31520	1468 bp downstream
Tssr31521	transcription start site region 31521	1382 bp downstream
Tssr31522	transcription start site region 31522	1360 bp downstream