rs52505085 SNP Detail

Summary

• ID
  rs52505085
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCACAAGAG CCTGGTTCTA TCCCAGAATT GCAAATAAAA
  GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA
  G
  GTAGGTAGGT AGGTAGGTAG GTAGGTAGAT AGATAGATAG ATAGATAGAT AGATAGATAG
  ATAGATGGGA CAGGACAGCA GCCAAGGGTC AGGGCTCAGG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144562816	ENSMUSSNP2668887	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52505085					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338859 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	within coordinates
Tssr49499	transcription start site region 49499	481 bp downstream
Tssr49500	transcription start site region 49500	1105 bp upstream
Tssr49501	transcription start site region 49501	1137 bp upstream