rs52506106 SNP Detail

Summary

• ID
  rs52506106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87750379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAAGACC ATCTGTGCCA TAAGAAACAG GTAAAACATC
  TGACACATGT TGGCTACTTG ATACACTTAT AAAATGAATG AATGAATGAA TGAATGAATG
  R
  ATATATTAGA GTCTAAGTAG AATCATAGTT TTTATATAGA AATAAAGAGA AGATAAAATA
  GAAAGAGAAA GAAAGAGAGA AAGAATGAGA GAAAGAGAGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301456	NES16910431	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52506106					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301456	NES16910431	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87750379 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	895 bp downstream
Tssr95089	transcription start site region 95089	878 bp downstream
Tssr95090	transcription start site region 95090	855 bp downstream
Tssr95091	transcription start site region 95091	833 bp downstream
Tssr95092	transcription start site region 95092	815 bp downstream
Tssr95093	transcription start site region 95093	781 bp downstream
Tssr95094	transcription start site region 95094	756 bp downstream
Tssr95095	transcription start site region 95095	748 bp downstream
Tssr95096	transcription start site region 95096	130 bp downstream
Tssr95097	transcription start site region 95097	104 bp downstream
Tssr95098	transcription start site region 95098	7 bp upstream
Tssr95099	transcription start site region 95099	770 bp upstream
Tssr95100	transcription start site region 95100	1784 bp upstream
Tssr95101	transcription start site region 95101	1841 bp upstream
Tssr95102	transcription start site region 95102	1875 bp upstream
Tssr95103	transcription start site region 95103	1910 bp upstream
Tssr95104	transcription start site region 95104	1959 bp upstream
Tssr98816	transcription start site region 98816	804 bp downstream