rs52506816 SNP Detail

Summary

• ID
  rs52506816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAG CAAGAAATAC ATTTGAGAGT
  R
  TGGCTGTGTA CACACGTAAC ACACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137997072	ENSMUSSNP2227502	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324138817	CHEV_12_102125787	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52506816					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853836 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36572	predicted gene, 36572			494 bp upstream
Gpr68	G protein-coupled receptor 68			Intron
				Noncoding-Transcript-Variant
Rr471362	regulatory region 471362			101 bp proximal
Rr471363	regulatory region 471363			322 bp proximal
Tssr114718	transcription start site region 114718			1696 bp downstream
Tssr117330	transcription start site region 117330			259 bp downstream
Tssr117331	transcription start site region 117331			293 bp downstream
Tssr117332	transcription start site region 117332			313 bp downstream
Tssr117333	transcription start site region 117333			348 bp downstream
Tssr117334	transcription start site region 117334			374 bp downstream
Tssr117335	transcription start site region 117335			449 bp downstream
Tssr117336	transcription start site region 117336			496 bp downstream