rs52507223 SNP Detail

Summary

• ID
  rs52507223
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81008478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACACTTA GCAAGTCAGA
  TAATATATTT ATATTTTTTG GTATCCCAAA GTGGAAATTC TCCAATCTCA CCCTCCAGGG
  TGCTGGGATT AAGTCATGTA TGAGCCCCAT ATTTGGTTAT ACCATATCAT TTACATAGAA
  GTTACTGGAG GTCAAAAAAG CAATTTAGAA AAACTTTTTG AGCAAAACCA AACAAACTTA
  C
  AAAGAATTTC TGCAATGTAA TTTTTCTTAG GACCCTCAAT ATATATAATT ACGCTGCATC
  AAAGTAACTT TTATTATGTT TACTAAATGC TGGTTAAAGC TGTGAGGTCC TGGACTGTCT
  TATTGTATTT TCATACCCAG AAAATGGAGT CATGCTTACA GAAAGTATAT GTTCAATTCA
  TTGAACTTAT GTTTAATTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146075183	ENSMUSSNP2663992	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52507223					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81008478 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	723 bp proximal
Tssr149503	transcription start site region 149503	270 bp upstream
Tssr149504	transcription start site region 149504	958 bp downstream