rs52507358 SNP Detail

Summary

• ID
  rs52507358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98941049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAGTTCT GACCACAGAG TCATCTCTTT GGCCCTTGGG
  TACATCTCTT TAAGTAAGAT GGGAAGTGCT TTGAAAGGCT TTCTCACCAC CAGATTTCTT
  Y
  CTCTCTCCGT CCTTCTTCTT CCTCCTCCTC CCTCACCACC TTCCTCTCCT TTTTCTTTCT
  TACAGTGTAA AACTCCAGGC CTCTCACATG CAATGGACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148463662	ENSMUSSNP6844369	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325079667	CHEV_15_98873599	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52507358					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98941049 () rs orientation: forward

Symbol	Name	Function Class
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	269 bp upstream
Rr509292	regulatory region 509292	1870 bp distal
Rr509293	regulatory region 509293	451 bp distal
Rr509294	regulatory region 509294	1030 bp proximal
Rr509295	regulatory region 509295	1222 bp proximal
Rr509296	regulatory region 509296	1596 bp proximal