rs52507503 SNP Detail

Summary

• ID
  rs52507503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCGTACC TGATGTGCCT CGCTGTCTGA GAGTTCACTT
  ATTTATTTAT CTATGTATTT ATTTATTTAT TAATTCCATT GCCCAGATGT TGTTATGTTT
  R
  TTTTGATATT TAAAGATATG CATTCGCTAA TTCACTGTAA TATCTTAAAA GGTCATTTTA
  ATATGTTAAA GTTTATTTTA ATAATGTTTA ATGTGTTCAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss61198251	NES16702741	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs52507503					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198251	NES16702741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053247 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Rr614422	regulatory region 614422	1505 bp distal
Tssr47224	transcription start site region 47224	1679 bp downstream
Tssr47225	transcription start site region 47225	1577 bp downstream
Tssr47226	transcription start site region 47226	1508 bp downstream
Tssr47227	transcription start site region 47227	1314 bp downstream
Tssr47228	transcription start site region 47228	1251 bp downstream
Tssr47229	transcription start site region 47229	1230 bp downstream
Tssr47230	transcription start site region 47230	1205 bp downstream
Tssr47231	transcription start site region 47231	1175 bp downstream
Tssr47232	transcription start site region 47232	1028 bp downstream
Tssr47233	transcription start site region 47233	978 bp downstream
Tssr47234	transcription start site region 47234	943 bp downstream
Tssr47235	transcription start site region 47235	185 bp downstream
Tssr47236	transcription start site region 47236	146 bp downstream
Tssr47237	transcription start site region 47237	126 bp downstream
Tssr47238	transcription start site region 47238	67 bp downstream
Tssr47239	transcription start site region 47239	62 bp downstream
Tssr47240	transcription start site region 47240	43 bp downstream
Tssr47241	transcription start site region 47241	14 bp downstream
Tssr47242	transcription start site region 47242	within coordinates
Tssr47243	transcription start site region 47243	22 bp upstream
Tssr47244	transcription start site region 47244	56 bp upstream
Tssr47245	transcription start site region 47245	76 bp upstream
Tssr47246	transcription start site region 47246	127 bp upstream
Tssr47247	transcription start site region 47247	171 bp upstream
Tssr47248	transcription start site region 47248	234 bp upstream
Tssr47249	transcription start site region 47249	304 bp upstream
Tssr47250	transcription start site region 47250	442 bp upstream
Tssr47251	transcription start site region 47251	506 bp upstream
Tssr47252	transcription start site region 47252	558 bp upstream
Tssr51812	transcription start site region 51812	1161 bp upstream
Tssr51813	transcription start site region 51813	1144 bp upstream
Tssr51814	transcription start site region 51814	170 bp upstream
Tssr51815	transcription start site region 51815	124 bp upstream
Tssr51816	transcription start site region 51816	91 bp upstream