rs52508162 SNP Detail

Summary

• ID
  rs52508162
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41339707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCTCATC GGCGGCTGTC AATGGAGAGG GGAGAGGGAT
  GGTAGTGGAG GGTTAGTGGG AAATCCTGGG CCTTAATTTT CTCCTTTAAG GGTTATCAGC
  K
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTGTTC TATCAGAGAT
  CCTATTTTCT ACATAACTAC ACTCTTTCTA AATAAAAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60601058	NES16305978	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		G	T	T	G		T
ss322633448	CHEV_8_41972024	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52508162					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601058	NES16305978	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41339707 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	326 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76992	transcription start site region 76992	1831 bp downstream
Tssr76993	transcription start site region 76993	1027 bp downstream
Tssr76994	transcription start site region 76994	24 bp downstream
Tssr76995	transcription start site region 76995	1182 bp upstream
Tssr76996	transcription start site region 76996	1237 bp upstream
Tssr76997	transcription start site region 76997	1346 bp upstream
Tssr76998	transcription start site region 76998	1731 bp upstream
Tssr81068	transcription start site region 81068	429 bp downstream