rs52508333 SNP Detail

Summary

• ID
  rs52508333
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94208270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAGATCT AACAAGAGTA GGTAGAATTA TAAGGTGGCC
  TGCAGGAAGG AAAATACTTT TAATAATAAG CATGAGGCCA AAACAACAAT AACAACAAAA
  W
  ACCAAAAAAC CCAAAACACC CCCAAACAAC CAAAAAGTAC CCTCCATCCC CCAAAGTTTC
  CCACTTACTC GCAAGTGCTG AAAAGCATGT ATACTATAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss146953773	ENSMUSSNP2455347	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320397537	CHEV_2_94218082	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52508333					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94208270 () rs orientation: forward

Symbol	Name	Function Class
Rr373553	regulatory region 373553	within coordinates
Rr561371	regulatory region 561371	945 bp proximal
Ttc17	tetratricopeptide repeat domain 17	Intron