rs52508877 SNP Detail

Summary

• ID
  rs52508877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88746215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTTTT GAGACAGGGT
  TTCTCTGTGC AGCCCTGACT GTCCTGGGAC TCTCTCTGTA GATCAGGCTG GGTTTGAACT
  CACAGAGATC TGCCTGCCTC TGCCTCCCAC GTGCTGGAAT TCAAGGCGAG CACCACCCCT
  GGCTGAACTT GGTTTCTTAA AAGCCAACTT TTCTTGCTCT TCCTTTCCTT CTCGTGCTCT
  Y
  TCTTCTGTAT CTTCTTTAAT TTGTCTACAT GAGTGGGGGG CAACAGTGAT GCTATGTAAG
  GAGATTTGCA GTAGATGTTG CTCCTCCGCT GAAGCACATC TTACATTTGC CCTGAGATTT
  CGTACTCTGA AGAAAACTGG GATTCTCCGG GACTTTGAAA AGAAAACAAA CAAACAAAAC
  AAAATGAAAT AGAACTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146190931	ENSMUSSNP3285287	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52508877					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88746215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	1405 bp proximal
Foxn2	forkhead box N2	1924 bp upstream
Rr340320	regulatory region 340320	985 bp proximal
Rr343688	regulatory region 343688	1561 bp distal
Rr343689	regulatory region 343689	415 bp distal
Rr405533	regulatory region 405533	1576 bp upstream
Tssr146228	transcription start site region 146228	1927 bp upstream
Tssr146229	transcription start site region 146229	1955 bp upstream